The pump uses a magnetically coupled plastic impeller but the housing is epoxy painted metal. It's rated for mildly caustic liquids. Not so much for electrolytes.
We used to be having electrolysis issues with the copper coils that was leaving a green deposit everywhere but with the new pump arrangement the ground potential has moved to the pump and it's attacking that so yes the deposits we are seeing is likely from the pump. To stop that you would have to remove the grounding from the pump and the chiller and that's simply not going to happen. We could try a full-duty glycol pump as all-plastic models are available but without solving the electrolysis issue permanently it will just go back to attacking the chiller coil again.
A flush with CLR or possibly even engine flush should work but it would likely dissolve the surgical tubing in the system.
Speaking of which, the air line has hardened and is quite dirty. It would be advisable to replace that soon.